| # | Team | MP | GD | Pts |
|---|---|---|---|---|
| 1 |  Panathinaikos | 2 | +5 | 6 |
| 2 |  Lugano | 2 | +4 | 6 |
| 3 |  Brann | 2 | +4 | 6 |
| 4 |  Trabzonspor | 2 | +4 | 6 |
| 5 |  FC Twente | 2 | +4 | 6 |
| 6 |  Monaco | 2 | +4 | 6 |
| 7 |  Sint-Truiden | 2 | +3 | 6 |
| 8 |  Hajduk Split | 2 | +2 | 6 |
| 9 |  Brighton & Hove Albion | 2 | +4 | 4 |
| 10 |  FC København | 2 | +3 | 4 |
| 11 |  Universitatea Craiova | 2 | +2 | 4 |
| 12 |  Mjällby | 2 | +2 | 4 |
| 13 |  Ajax | 2 | +1 | 3 |
| 14 |  Borac Banja Luka | 2 | +1 | 3 |
| 15 |  Atalanta | 2 | 0 | 3 |
| 16 |  Sporting Braga | 2 | -1 | 3 |
| 17 |  Gent | 2 | -1 | 3 |
| 18 |  SC Freiburg | 2 | -2 | 3 |
| 19 |  Nordsjælland | 2 | 0 | 2 |
| 20 |  Egnatia Rrogozhinë | 2 | 0 | 2 |
| 21 |  Riga | 2 | 0 | 2 |
| 22 |  Crvena Zvezda | 2 | -1 | 1 |
| 23 |  CSKA Sofia | 2 | -1 | 1 |
| 24 |  Jablonec | 2 | -1 | 1 |
| 25 |  FC Midtjylland | 2 | -1 | 1 |
| 26 |  AGF | 2 | -1 | 1 |
| 27 |  Pafos FC | 2 | -2 | 1 |
| 28 |  Hearts | 2 | -2 | 1 |
| 29 |  FC Iberia 1999 | 2 | -2 | 1 |
| 30 |  Getafe | 2 | -3 | 1 |
| 31 |  Kairat | 2 | -4 | 1 |
| 32 |  Thun | 2 | -2 | 0 |
| 33 |  Lincoln Red Imps | 2 | -4 | 0 |
| 34 |  KuPS | 2 | -4 | 0 |
| 35 |  Inter Club d'Escaldes | 2 | -4 | 0 |
| 36 |  Kauno Žalgiris | 2 | -7 | 0 |